Strain Passport - Pseudomonas aeruginosa

1. Taxonomy

Taxonomy
Domain Bacteria
Phylum Proteobacteria
Class Gammaproteobacteria
Order Pseudomonadales
Family Pseudomonadaceae
Genus Pseudomonas
Species Pseudomonas aeruginosa

2. Assembly Statistics

Assembly Statistics
MAGID MAG05
Size (bp) 6159304
N.contigs 123
GC (%) 66.5
N50 (bp) 84806
Coding Density 89.6
N.CDSs 5655
Genome Completeness
Completeness 93.89
Contamination 0.49
Strain heterogeneity 0.00

3. Metabolism and Function (KEGG)

KEGG Function Annotation

Pseudomonas aeruginosa KEGG Functional Classification

KEGG Resistome

name Type Level1 Level2 Description KO
ko01504 Gene variants beta-Lactamase genes Class C [MT] K20320 blaPDC; beta-lactamase class C PDC [EC:3.5.2.6] K20320
ko01504 Gene variants Aminoglycoside resistance genes O-Phosphotransferases K19300 aph3-II; aminoglycoside 3’-phosphotransferase II [EC:2.7.1.95] K19300
ko01504 Gene variants Aminoglycoside resistance genes O-Phosphotransferases K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] K04343
ko01504 Gene variants Tetracycline resistance genes Transporters K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein K08151
ko01504 Gene variants Macrolide resistance genes Others K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] K18235
ko01504 Gene variants Phenicol resistance genes Acetyltransferases K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] K00638
ko01504 Gene variants Quinolone resistance genes Transporter K08167 smvA, qacA, lfrA; MFS transporter, DHA2 family, multidrug resistance protein K08167
ko01504 Gene variants Fosfomycin resistance genes Transferases K21253 fosA; glutathione S-transferase fosA [EC:2.5.1.18] K21253
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] K18072
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K18073 parR; two-component system, OmpR family, response regulator ParR K18073
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K07644 cusS, copS, silS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] K07644
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K07665 cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR K07665
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator K18297
ko01504 Gene sets beta-Lactam resistance modules Imipenem resistance, repression of porin OprD [MD:M00745] K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] K18093
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K18346 vanW; vancomycin resistance protein VanW K18346
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] K08641
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] K03367
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] K14205
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, protease PgtE [MD:M00744] K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] K07637
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, protease PgtE [MD:M00744] K07660 phoP; two-component system, OmpR family, response regulator PhoP K07660
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon K18131
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K03585 acrA, mexA, adeI, smeD, mtrC, cmeA; membrane fusion protein, multidrug efflux system K03585
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K18138 acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump K18138
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system K18139
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexCD-OprJ [MD:M00639] K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor K18294
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexCD-OprJ [MD:M00639] K18295 mexC; membrane fusion protein, multidrug efflux system K18295
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator K18297
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] K18298 mexE; membrane fusion protein, multidrug efflux system K18298
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] K18299 mexF; multidrug efflux pump K18299
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] K18300 oprN; outer membrane protein, multidrug efflux system K18300
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor K18301
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] K18302 mexJ; membrane fusion protein, multidrug efflux system K18302
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] K18303 mexK; multidrug efflux pump K18303
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system K18139
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor K18129
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] K18094 mexX, amrA; membrane fusion protein, multidrug efflux system K18094
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] K18095 mexY, amrB; multidrug efflux pump K18095
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system K18139
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR K18304
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K19591 cueR; MerR family transcriptional regulator, copper efflux regulator K19591
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K19595 gesA, mexP; membrane fusion protein, gold/copper resistance efflux system K19595
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K19594 gesB, mexQ; gold/copper resistance efflux pump K19594
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K19593 opmE; outer membrane protein, multidrug efflux system K19593
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump AcrEF-TolC [MD:M00696] K12340 tolC, bepC, cyaE, raxC, sapF, rsaF, hasF; outer membrane protein K12340
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697] K07690 evgA, bvgA; two-component system, NarL family, response regulator EvgA K07690
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697] K12340 tolC, bepC, cyaE, raxC, sapF, rsaF, hasF; outer membrane protein K12340
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump BpeEF-OprC [MD:M00698] K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC K18900
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump BpeEF-OprC [MD:M00698] K18903 oprC, opcM; outer membrane protein, multidrug efflux system K18903
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump QacA [MD:M00714] K08167 smvA, qacA, lfrA; MFS transporter, DHA2 family, multidrug resistance protein K08167

KEGG Toxins

name Type Level1 Level2 Description KO
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K03699 tlyC; magnesium and cobalt exporter, CNNM family tlyC; magnesium and cobalt exporter, CNNM family K03699
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K11068 hlyIII; hemolysin III hlyIII; hemolysin III K11068
ko02042 Type II toxins: Membrane damaging toxins Toxins that enzymatically damage the membrane K01114 plc; phospholipase C [EC:3.1.4.3] plc; phospholipase C [EC:3.1.4.3] K01114
ko02042 Not specified Hydrogen cyanide production K10814 hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] K10814
ko02042 Not specified Hydrogen cyanide production K10815 hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] K10815
ko02042 Not specified Hydrogen cyanide production K10816 hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] K10816
ko02042 Type III toxins: Intracellular toxins ADP-ribosyltransferase Exototoxin-A (ETA) toxA; exotoxin A [EC:2.4.2.-] K11020
ko02042 Type III toxins: Intracellular toxins ADP-ribosyltransferase Exoenzyme S/T exoS; exoenzyme S K16635
ko02042 Type III toxins: Intracellular toxins Others Zona occludens toxin zot; zona occludens toxin K10954

KEGG Bacterial Virulence

GeneID KO Description PFAM
MAG05_KHEJPB_02045 K23475 transloator Secretion system effector C (SseC) like family [PF04888.15]…
MAG05_KHEJPB_02050 K23476 transloator YopD protein [PF05844.15]…
MAG05_KHEJPB_09125 K07347 outer membrane usher protein Outer membrane usher protein [PF00577.23]…
MAG05_KHEJPB_09135 K07345 major type 1 subunit fimbrin (pilin) Fimbrial protein [PF00419.23]…
MAG05_KHEJPB_09705 K07347 outer membrane usher protein Outer membrane usher protein [PF00577.23]…
MAG05_KHEJPB_09715 K07345 major type 1 subunit fimbrin (pilin) Fimbrial protein [PF00419.23]…
MAG05_KHEJPB_14965 K03596 GTP-binding protein LepA GTP-binding protein LepA C-terminus [PF06421.15]…
MAG05_KHEJPB_19925 K10954 zona occludens toxin Zonular occludens toxin (Zot) [PF05707.15]…
MAG05_KHEJPB_22530 K07347 outer membrane usher protein Outer membrane usher protein [PF00577.23]…
MAG05_KHEJPB_24605 K07326 hemolysin activation/secretion protein Haemolysin secretion/activation protein ShlB/FhaC/HecB [PF03865.16]…
MAG05_KHEJPB_24610 K15125 filamentous hemagglutinin Possible hemagglutinin (DUF637) [PF04830.16]…
MAG05_KHEJPB_26750 K07347 outer membrane usher protein Outer membrane usher protein [PF00577.23]…

Carbon Metabolism

Nitrogen Metabolism

4. Expert systems

AMRFinderPlus Antimicrobial Resistance

AMRFinderPlus
locus pscc.product gene_family class subclass
KHEJPB_04500 Glutathione transferase FosA fosA FOSFOMYCIN FOSFOMYCIN
KHEJPB_09875 Aminoglycoside 3’-phosphotransferase aph(3’)-IIb AMINOGLYCOSIDE KANAMYCIN
KHEJPB_11370 HlyD_D23 domain-containing protein mexE EFFLUX EFFLUX
KHEJPB_13465 Multidrug resistance protein MexA mexA EFFLUX EFFLUX
KHEJPB_15385 Chloramphenicol acetyltransferase catB7 PHENICOL CHLORAMPHENICOL
KHEJPB_18380 Chromate transport protein chrA CHROMATE CHROMATE
KHEJPB_18395 Broad mercury transporter MerE merE MERCURY MERCURY
KHEJPB_18400 HTH-type transcriptional regulator MerD merD MERCURY MERCURY
KHEJPB_18405 Mercuric reductase merA MERCURY MERCURY
KHEJPB_18410 Mercuric transport protein periplasmic component merP MERCURY MERCURY
KHEJPB_18415 Mercuric transport protein MerT merT MERCURY MERCURY
KHEJPB_18420 Mercuric resistance operon regulatory protein merR MERCURY MERCURY
KHEJPB_18920 Multidrug efflux RND transporter periplasmic adaptor subunit MexX mexX EFFLUX EFFLUX
KHEJPB_28560 Efflux pump membrane transporter tbtB EFFLUX EFFLUX
KHEJPB_28565 Outer membrane protein OprM tbtM EFFLUX EFFLUX

Virulence factors (VFDB)

VFDB
VFG.x VFCID VFcategory VFSubcategory psc.uniref90_id
VFG000155 VFC0258 Immune modulation LPS UniRef90_A0A411F6U9
VFG000152 VFC0271 Biofilm Csu fimbriae UniRef90_P54292
VFG014668 VFC0204 Motility Polar flagella UniRef90_A0A071KYA9
VFG014655 VFC0204 Motility Polar flagella UniRef90_G3XCL4
VFG014642 VFC0204 Motility Polar flagella UniRef90_A0A6M3VAZ2
VFG043018 VFC0204 Motility Polar flagella UniRef90_A0A2R3J310
VFG043017 VFC0204 Motility Polar flagella UniRef90_O87131
VFG041014 VFC0086 Effector delivery system T2SS UniRef90_A0A0A8RKY5
VFG041015 VFC0086 Effector delivery system T2SS UniRef90_A0A231II97
VFG041016 VFC0086 Effector delivery system T2SS UniRef90_A0A077F712
VFG041017 VFC0086 Effector delivery system T2SS UniRef90_A0A0D5XRU8
VFG041019 VFC0086 Effector delivery system T2SS UniRef90_A0A080VGI1
VFG041020 VFC0086 Effector delivery system T2SS UniRef90_A0A509J9K6
VFG041021 VFC0086 Effector delivery system T2SS UniRef90_A0A0C7CXG8
VFG041022 VFC0086 Effector delivery system T2SS UniRef90_A0A080VH65
VFG041023 VFC0086 Effector delivery system T2SS UniRef90_A6V7C6
VFG041024 VFC0086 Effector delivery system T2SS UniRef90_A0A072ZI38
VFG041025 VFC0086 Effector delivery system T2SS UniRef90_A0A069Q286
VFG041026 VFC0086 Effector delivery system T2SS UniRef90_A0A1F1FCN8
VFG041027 VFC0086 Effector delivery system T2SS UniRef90_A0A7M3A0W5
VFG041028 VFC0086 Effector delivery system T2SS UniRef90_A0A2R3IT49
VFG041029 VFC0086 Effector delivery system T2SS UniRef90_A0A069PZN3
VFG000195 VFC0086 Effector delivery system T2SS UniRef90_A0A072ZI04
VFG000127 VFC0271 Biofilm Csu fimbriae UniRef90_Q51371
VFG000130 VFC0271 Biofilm Csu fimbriae UniRef90_Q51392
VFG000132 VFC0271 Biofilm Csu fimbriae UniRef90_Q06062
VFG000133 VFC0271 Biofilm Csu fimbriae UniRef90_P07874
VFG043648 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_P45684
VFG015000 VFC0271 Biofilm Csu fimbriae UniRef90_Q9HXY3
VFG042736 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A0H2ZGR9
VFG000115 VFC0235 Exotoxin Phospholipase C UniRef90_P11439
VFG015045 VFC0258 Immune modulation LPS UniRef90_A0A0A8RJG2
VFG001255 VFC0204 Motility Polar flagella UniRef90_A0A069Q4P9
VFG001254 VFC0204 Motility Polar flagella UniRef90_Q9I4N1
VFG001253 VFC0204 Motility Polar flagella UniRef90_A0A8G2RY16
VFG001252 VFC0204 Motility Polar flagella UniRef90_Q51464
VFG001251 VFC0204 Motility Polar flagella UniRef90_Q51463
VFG001250 VFC0204 Motility Polar flagella UniRef90_A6V990
VFG001243 VFC0204 Motility Polar flagella UniRef90_Q9I4P4
VFG001242 VFC0204 Motility Polar flagella UniRef90_A6V9B1
VFG001241 VFC0204 Motility Polar flagella UniRef90_A6V9B2
VFG001240 VFC0204 Motility Polar flagella UniRef90_A0A0H3YS53
VFG001239 VFC0204 Motility Polar flagella UniRef90_A0A022P348
VFG001238 VFC0204 Motility Polar flagella UniRef90_A0A0C7D3W8
VFG001237 VFC0204 Motility Polar flagella UniRef90_A0A6A9JV36
VFG001236 VFC0204 Motility Polar flagella UniRef90_A0A022P584
VFG014148 VFC0204 Motility Polar flagella UniRef90_A0A072ZMR8
VFG000157 VFC0235 Exotoxin Phospholipase C UniRef90_P06200
VFG043016 VFC0204 Motility Polar flagella UniRef90_A0A2R3ITW3
VFG014720 VFC0204 Motility Polar flagella UniRef90_O87127
VFG014707 VFC0204 Motility Polar flagella UniRef90_A0A022P1K4
VFG043015 VFC0204 Motility Polar flagella UniRef90_O87125
VFG043014 VFC0204 Motility Polar flagella UniRef90_O87124
VFG043013 VFC0204 Motility Polar flagella UniRef90_Q51434
VFG043012 VFC0204 Motility Polar flagella UniRef90_Q51455
VFG014629 VFC0204 Motility Polar flagella UniRef90_P29248
VFG001264 VFC0204 Motility Polar flagella UniRef90_Q9I3P8
VFG001263 VFC0204 Motility Polar flagella UniRef90_A0A127MPP5
VFG001262 VFC0204 Motility Polar flagella UniRef90_A0A241XTI8
VFG001261 VFC0204 Motility Polar flagella UniRef90_A0A0A8RK36
VFG001260 VFC0204 Motility Polar flagella UniRef90_A0A071L0K5
VFG001259 VFC0204 Motility Polar flagella UniRef90_Q51468
VFG001258 VFC0204 Motility Polar flagella UniRef90_Q51467
VFG001257 VFC0204 Motility Polar flagella UniRef90_A0A127MWW5
VFG001256 VFC0204 Motility Polar flagella UniRef90_Q51465
VFG014486 VFC0204 Motility Polar flagella UniRef90_A0A022NZV4
VFG014473 VFC0204 Motility Polar flagella UniRef90_A6V857
VFG001214 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_Q00934
VFG001215 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A069PYC1
VFG001216 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_Q59652
VFG042140 VFC0086 Effector delivery system T2SS UniRef90_Q51448
VFG001235 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_O87005
VFG001234 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_O87004
VFG001233 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_O87003
VFG001232 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A2R3IRN7
VFG001227 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_P43502
VFG001224 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_G3XCX3
VFG014893 VFC0271 Biofilm Csu fimbriae UniRef90_Q02E40
VFG016005 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A231ZIS3
VFG044085 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A069PX34
VFG041043 VFC0086 Effector delivery system T2SS UniRef90_A0A0F6RSD0
VFG041042 VFC0086 Effector delivery system T2SS UniRef90_A0A080VGJ7
VFG041041 VFC0086 Effector delivery system T2SS UniRef90_A0A8G2RHN4
VFG041040 VFC0086 Effector delivery system T2SS UniRef90_A6V5B8
VFG041039 VFC0086 Effector delivery system T2SS UniRef90_A0A0A8RNH0
VFG041038 VFC0086 Effector delivery system T2SS UniRef90_G8QBH8
VFG041037 VFC0086 Effector delivery system T2SS UniRef90_A0A8B4ZT51
VFG041036 VFC0086 Effector delivery system T2SS UniRef90_A6V5C2
VFG041035 VFC0086 Effector delivery system T2SS UniRef90_A0A3E1N054
VFG041034 VFC0086 Effector delivery system T2SS UniRef90_UPI000F789522
VFG041033 VFC0086 Effector delivery system T2SS UniRef90_A6V5C6
VFG041032 VFC0086 Effector delivery system T2SS UniRef90_A6V5C7
VFG041031 VFC0086 Effector delivery system T2SS UniRef90_A0A3M5DC48
VFG014694 VFC0204 Motility Polar flagella UniRef90_A0A024HQ78
VFG000141 VFC0258 Immune modulation LPS UniRef90_A6VDA7
VFG000140 VFC0258 Immune modulation LPS UniRef90_Q9HUF7
VFG000139 VFC0258 Immune modulation LPS UniRef90_A0A069QA96
VFG000142 VFC0258 Immune modulation LPS UniRef90_O33425
VFG000143 VFC0258 Immune modulation LPS UniRef90_O05196
VFG000121 VFC0271 Biofilm Csu fimbriae UniRef90_Q06198
VFG000171 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_Q51508
VFG016087 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_Q5DIN3
VFG050300 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A072ZBU1
VFG050299 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_Q9I2F2
VFG050298 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_V6AG60
VFG050297 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A6A9KFQ6
VFG050296 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A3M5D456
VFG050295 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_A0A072ZBU4
VFG016046 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A2R3IST8
VFG044088 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A0A8RNQ1
VFG016041 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A643EJ37
VFG000160 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_Q5DIW1
VFG050294 VFC0086 Effector delivery system T2SS UniRef90_Q9I733
VFG015551 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A643IS24
VFG013948 VFC0001 Adherence Acinetobacter trimeric autotransporter_Ata UniRef90_Q51538
VFG002062 VFC0086 Effector delivery system T2SS UniRef90_A0A1Y3KGX5
VFG002063 VFC0086 Effector delivery system T2SS UniRef90_Q9I755
VFG002064 VFC0086 Effector delivery system T2SS UniRef90_A0A3S4NQH5
VFG002065 VFC0086 Effector delivery system T2SS UniRef90_Q9I753
VFG002066 VFC0086 Effector delivery system T2SS UniRef90_A0A080VF59
VFG002076 VFC0086 Effector delivery system T2SS UniRef90_UPI0003B945B2
VFG002075 VFC0086 Effector delivery system T2SS UniRef90_A0A0C7CXW4
VFG002074 VFC0086 Effector delivery system T2SS UniRef90_Q9I744
VFG002073 VFC0086 Effector delivery system T2SS UniRef90_Q9I745
VFG044098 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A1C7B7G6
VFG002069 VFC0086 Effector delivery system T2SS UniRef90_Q9I749
VFG002068 VFC0086 Effector delivery system T2SS UniRef90_Q9I750
VFG044096 VFC0272 Nutritional/Metabolic factor Acinetobactin UniRef90_A0A0C6ER87

5. BacDive

BacDive
Species Pseudomonas aeruginosa
ncbi_taxid 287
taxid_matching_level species
type_strain no
medium_name COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
medium_link NA
strain_history NA
gram NA
length NA
width NA
motility NA
oxygen_tolerance NA
spore NA
aggregation_score NA
GC_content NA
antibiotic_resistance_chebi NA
antibiotic_resistance_metabolite NA

6. Publications

7. U.S. Patents

First 10 patents out of 84

patent_number patent_title
10072305 Real-time PCR for the detection of pathogens
10077431 Phage therapy of pseudomonas infections
10105380 Glycoclusters and their pharmaceutical use as antibacterials
10117905 Compositions and methods to prevent cancer with cupredoxins
10159751 ExPEC glycoconjugate vaccine formulations
10179146 Compositions and methods for mitigating drug resistant bacteria
10221222 Dermaseptin-type and piscidin-type antimicrobial peptides
10238689 Methods for combating bacterial infections by killing persister cells with mitomycin C and/or cisplatin
10258640 Method of inhibiting quorum sensing in Pseudomonas aeruginosa
10260051 Phage therapy of Pseudomonas infections