Strain Passport - Pseudomonas aeruginosa
1. Taxonomy
|
Taxonomy
|
|
|---|---|
| Domain | Bacteria |
| Phylum | Proteobacteria |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas aeruginosa |
2. Assembly Statistics
|
Assembly Statistics
|
|
|---|---|
| MAGID | MAG05 |
| Size (bp) | 6159304 |
| N.contigs | 123 |
| GC (%) | 66.5 |
| N50 (bp) | 84806 |
| Coding Density | 89.6 |
| N.CDSs | 5655 |
|
Genome Completeness
|
|
|---|---|
| Completeness | 93.89 |
| Contamination | 0.49 |
| Strain heterogeneity | 0.00 |
3. Metabolism and Function (KEGG)
KEGG Function Annotation
Pseudomonas aeruginosa KEGG Functional Classification
KEGG Resistome
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko01504 | Gene variants | beta-Lactamase genes | Class C [MT] | K20320 blaPDC; beta-lactamase class C PDC [EC:3.5.2.6] | K20320 |
| ko01504 | Gene variants | Aminoglycoside resistance genes | O-Phosphotransferases | K19300 aph3-II; aminoglycoside 3’-phosphotransferase II [EC:2.7.1.95] | K19300 |
| ko01504 | Gene variants | Aminoglycoside resistance genes | O-Phosphotransferases | K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] | K04343 |
| ko01504 | Gene variants | Tetracycline resistance genes | Transporters | K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein | K08151 |
| ko01504 | Gene variants | Macrolide resistance genes | Others | K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] | K18235 |
| ko01504 | Gene variants | Phenicol resistance genes | Acetyltransferases | K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] | K00638 |
| ko01504 | Gene variants | Quinolone resistance genes | Transporter | K08167 smvA, qacA, lfrA; MFS transporter, DHA2 family, multidrug resistance protein | K08167 |
| ko01504 | Gene variants | Fosfomycin resistance genes | Transferases | K21253 fosA; glutathione S-transferase fosA [EC:2.5.1.18] | K21253 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K18072 parS; two-component system, OmpR family, sensor kinase ParS [EC:2.7.13.3] | K18072 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K18073 parR; two-component system, OmpR family, response regulator ParR | K18073 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K07644 cusS, copS, silS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] | K07644 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K07665 cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR | K07665 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator | K18297 |
| ko01504 | Gene sets | beta-Lactam resistance modules | Imipenem resistance, repression of porin OprD [MD:M00745] | K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-] | K18093 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K18346 vanW; vancomycin resistance protein VanW | K18346 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] | K08641 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] | K03367 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] | K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] | K14205 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, protease PgtE [MD:M00744] | K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] | K07637 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, protease PgtE [MD:M00744] | K07660 phoP; two-component system, OmpR family, response regulator PhoP | K07660 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] | K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon | K18131 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] | K03585 acrA, mexA, adeI, smeD, mtrC, cmeA; membrane fusion protein, multidrug efflux system | K03585 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] | K18138 acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump | K18138 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] | K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system | K18139 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexCD-OprJ [MD:M00639] | K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor | K18294 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexCD-OprJ [MD:M00639] | K18295 mexC; membrane fusion protein, multidrug efflux system | K18295 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] | K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator | K18297 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] | K18298 mexE; membrane fusion protein, multidrug efflux system | K18298 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] | K18299 mexF; multidrug efflux pump | K18299 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexEF-OprN [MD:M00641] | K18300 oprN; outer membrane protein, multidrug efflux system | K18300 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] | K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor | K18301 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] | K18302 mexJ; membrane fusion protein, multidrug efflux system | K18302 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] | K18303 mexK; multidrug efflux pump | K18303 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] | K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system | K18139 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] | K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor | K18129 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] | K18094 mexX, amrA; membrane fusion protein, multidrug efflux system | K18094 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] | K18095 mexY, amrB; multidrug efflux pump | K18095 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexXY-OprM [MD:M00643] | K18139 oprM, emhC, ttgC, cusC, adeK, smeF, mtrE, cmeC, gesC; outer membrane protein, multidrug efflux system | K18139 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] | K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR | K18304 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] | K19591 cueR; MerR family transcriptional regulator, copper efflux regulator | K19591 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] | K19595 gesA, mexP; membrane fusion protein, gold/copper resistance efflux system | K19595 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] | K19594 gesB, mexQ; gold/copper resistance efflux pump | K19594 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] | K19593 opmE; outer membrane protein, multidrug efflux system | K19593 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump AcrEF-TolC [MD:M00696] | K12340 tolC, bepC, cyaE, raxC, sapF, rsaF, hasF; outer membrane protein | K12340 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697] | K07690 evgA, bvgA; two-component system, NarL family, response regulator EvgA | K07690 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697] | K12340 tolC, bepC, cyaE, raxC, sapF, rsaF, hasF; outer membrane protein | K12340 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump BpeEF-OprC [MD:M00698] | K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC | K18900 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump BpeEF-OprC [MD:M00698] | K18903 oprC, opcM; outer membrane protein, multidrug efflux system | K18903 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump QacA [MD:M00714] | K08167 smvA, qacA, lfrA; MFS transporter, DHA2 family, multidrug resistance protein | K08167 |
KEGG Toxins
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K03699 tlyC; magnesium and cobalt exporter, CNNM family | tlyC; magnesium and cobalt exporter, CNNM family | K03699 |
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K11068 hlyIII; hemolysin III | hlyIII; hemolysin III | K11068 |
| ko02042 | Type II toxins: Membrane damaging toxins | Toxins that enzymatically damage the membrane | K01114 plc; phospholipase C [EC:3.1.4.3] | plc; phospholipase C [EC:3.1.4.3] | K01114 |
| ko02042 | Not specified | Hydrogen cyanide production | K10814 hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] | hcnA; hydrogen cyanide synthase HcnA [EC:1.4.99.5] | K10814 |
| ko02042 | Not specified | Hydrogen cyanide production | K10815 hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] | hcnB; hydrogen cyanide synthase HcnB [EC:1.4.99.5] | K10815 |
| ko02042 | Not specified | Hydrogen cyanide production | K10816 hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] | hcnC; hydrogen cyanide synthase HcnC [EC:1.4.99.5] | K10816 |
| ko02042 | Type III toxins: Intracellular toxins | ADP-ribosyltransferase | Exototoxin-A (ETA) | toxA; exotoxin A [EC:2.4.2.-] | K11020 |
| ko02042 | Type III toxins: Intracellular toxins | ADP-ribosyltransferase | Exoenzyme S/T | exoS; exoenzyme S | K16635 |
| ko02042 | Type III toxins: Intracellular toxins | Others | Zona occludens toxin | zot; zona occludens toxin | K10954 |
KEGG Bacterial Virulence
| GeneID | KO | Description | PFAM |
|---|---|---|---|
| MAG05_KHEJPB_02045 | K23475 | transloator | Secretion system effector C (SseC) like family [PF04888.15]… |
| MAG05_KHEJPB_02050 | K23476 | transloator | YopD protein [PF05844.15]… |
| MAG05_KHEJPB_09125 | K07347 | outer membrane usher protein | Outer membrane usher protein [PF00577.23]… |
| MAG05_KHEJPB_09135 | K07345 | major type 1 subunit fimbrin (pilin) | Fimbrial protein [PF00419.23]… |
| MAG05_KHEJPB_09705 | K07347 | outer membrane usher protein | Outer membrane usher protein [PF00577.23]… |
| MAG05_KHEJPB_09715 | K07345 | major type 1 subunit fimbrin (pilin) | Fimbrial protein [PF00419.23]… |
| MAG05_KHEJPB_14965 | K03596 | GTP-binding protein LepA | GTP-binding protein LepA C-terminus [PF06421.15]… |
| MAG05_KHEJPB_19925 | K10954 | zona occludens toxin | Zonular occludens toxin (Zot) [PF05707.15]… |
| MAG05_KHEJPB_22530 | K07347 | outer membrane usher protein | Outer membrane usher protein [PF00577.23]… |
| MAG05_KHEJPB_24605 | K07326 | hemolysin activation/secretion protein | Haemolysin secretion/activation protein ShlB/FhaC/HecB [PF03865.16]… |
| MAG05_KHEJPB_24610 | K15125 | filamentous hemagglutinin | Possible hemagglutinin (DUF637) [PF04830.16]… |
| MAG05_KHEJPB_26750 | K07347 | outer membrane usher protein | Outer membrane usher protein [PF00577.23]… |
Carbon Metabolism
Nitrogen Metabolism
4. Expert systems
AMRFinderPlus Antimicrobial Resistance
|
AMRFinderPlus
|
||||
|---|---|---|---|---|
| locus | pscc.product | gene_family | class | subclass |
| KHEJPB_04500 | Glutathione transferase FosA | fosA | FOSFOMYCIN | FOSFOMYCIN |
| KHEJPB_09875 | Aminoglycoside 3’-phosphotransferase | aph(3’)-IIb | AMINOGLYCOSIDE | KANAMYCIN |
| KHEJPB_11370 | HlyD_D23 domain-containing protein | mexE | EFFLUX | EFFLUX |
| KHEJPB_13465 | Multidrug resistance protein MexA | mexA | EFFLUX | EFFLUX |
| KHEJPB_15385 | Chloramphenicol acetyltransferase | catB7 | PHENICOL | CHLORAMPHENICOL |
| KHEJPB_18380 | Chromate transport protein | chrA | CHROMATE | CHROMATE |
| KHEJPB_18395 | Broad mercury transporter MerE | merE | MERCURY | MERCURY |
| KHEJPB_18400 | HTH-type transcriptional regulator MerD | merD | MERCURY | MERCURY |
| KHEJPB_18405 | Mercuric reductase | merA | MERCURY | MERCURY |
| KHEJPB_18410 | Mercuric transport protein periplasmic component | merP | MERCURY | MERCURY |
| KHEJPB_18415 | Mercuric transport protein MerT | merT | MERCURY | MERCURY |
| KHEJPB_18420 | Mercuric resistance operon regulatory protein | merR | MERCURY | MERCURY |
| KHEJPB_18920 | Multidrug efflux RND transporter periplasmic adaptor subunit MexX | mexX | EFFLUX | EFFLUX |
| KHEJPB_28560 | Efflux pump membrane transporter | tbtB | EFFLUX | EFFLUX |
| KHEJPB_28565 | Outer membrane protein OprM | tbtM | EFFLUX | EFFLUX |
Virulence factors (VFDB)
|
VFDB
|
||||
|---|---|---|---|---|
| VFG.x | VFCID | VFcategory | VFSubcategory | psc.uniref90_id |
| VFG000155 | VFC0258 | Immune modulation | LPS | UniRef90_A0A411F6U9 |
| VFG000152 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_P54292 |
| VFG014668 | VFC0204 | Motility | Polar flagella | UniRef90_A0A071KYA9 |
| VFG014655 | VFC0204 | Motility | Polar flagella | UniRef90_G3XCL4 |
| VFG014642 | VFC0204 | Motility | Polar flagella | UniRef90_A0A6M3VAZ2 |
| VFG043018 | VFC0204 | Motility | Polar flagella | UniRef90_A0A2R3J310 |
| VFG043017 | VFC0204 | Motility | Polar flagella | UniRef90_O87131 |
| VFG041014 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0A8RKY5 |
| VFG041015 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A231II97 |
| VFG041016 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A077F712 |
| VFG041017 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0D5XRU8 |
| VFG041019 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A080VGI1 |
| VFG041020 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A509J9K6 |
| VFG041021 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0C7CXG8 |
| VFG041022 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A080VH65 |
| VFG041023 | VFC0086 | Effector delivery system | T2SS | UniRef90_A6V7C6 |
| VFG041024 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A072ZI38 |
| VFG041025 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A069Q286 |
| VFG041026 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A1F1FCN8 |
| VFG041027 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A7M3A0W5 |
| VFG041028 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A2R3IT49 |
| VFG041029 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A069PZN3 |
| VFG000195 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A072ZI04 |
| VFG000127 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q51371 |
| VFG000130 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q51392 |
| VFG000132 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q06062 |
| VFG000133 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_P07874 |
| VFG043648 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_P45684 |
| VFG015000 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q9HXY3 |
| VFG042736 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A0H2ZGR9 |
| VFG000115 | VFC0235 | Exotoxin | Phospholipase C | UniRef90_P11439 |
| VFG015045 | VFC0258 | Immune modulation | LPS | UniRef90_A0A0A8RJG2 |
| VFG001255 | VFC0204 | Motility | Polar flagella | UniRef90_A0A069Q4P9 |
| VFG001254 | VFC0204 | Motility | Polar flagella | UniRef90_Q9I4N1 |
| VFG001253 | VFC0204 | Motility | Polar flagella | UniRef90_A0A8G2RY16 |
| VFG001252 | VFC0204 | Motility | Polar flagella | UniRef90_Q51464 |
| VFG001251 | VFC0204 | Motility | Polar flagella | UniRef90_Q51463 |
| VFG001250 | VFC0204 | Motility | Polar flagella | UniRef90_A6V990 |
| VFG001243 | VFC0204 | Motility | Polar flagella | UniRef90_Q9I4P4 |
| VFG001242 | VFC0204 | Motility | Polar flagella | UniRef90_A6V9B1 |
| VFG001241 | VFC0204 | Motility | Polar flagella | UniRef90_A6V9B2 |
| VFG001240 | VFC0204 | Motility | Polar flagella | UniRef90_A0A0H3YS53 |
| VFG001239 | VFC0204 | Motility | Polar flagella | UniRef90_A0A022P348 |
| VFG001238 | VFC0204 | Motility | Polar flagella | UniRef90_A0A0C7D3W8 |
| VFG001237 | VFC0204 | Motility | Polar flagella | UniRef90_A0A6A9JV36 |
| VFG001236 | VFC0204 | Motility | Polar flagella | UniRef90_A0A022P584 |
| VFG014148 | VFC0204 | Motility | Polar flagella | UniRef90_A0A072ZMR8 |
| VFG000157 | VFC0235 | Exotoxin | Phospholipase C | UniRef90_P06200 |
| VFG043016 | VFC0204 | Motility | Polar flagella | UniRef90_A0A2R3ITW3 |
| VFG014720 | VFC0204 | Motility | Polar flagella | UniRef90_O87127 |
| VFG014707 | VFC0204 | Motility | Polar flagella | UniRef90_A0A022P1K4 |
| VFG043015 | VFC0204 | Motility | Polar flagella | UniRef90_O87125 |
| VFG043014 | VFC0204 | Motility | Polar flagella | UniRef90_O87124 |
| VFG043013 | VFC0204 | Motility | Polar flagella | UniRef90_Q51434 |
| VFG043012 | VFC0204 | Motility | Polar flagella | UniRef90_Q51455 |
| VFG014629 | VFC0204 | Motility | Polar flagella | UniRef90_P29248 |
| VFG001264 | VFC0204 | Motility | Polar flagella | UniRef90_Q9I3P8 |
| VFG001263 | VFC0204 | Motility | Polar flagella | UniRef90_A0A127MPP5 |
| VFG001262 | VFC0204 | Motility | Polar flagella | UniRef90_A0A241XTI8 |
| VFG001261 | VFC0204 | Motility | Polar flagella | UniRef90_A0A0A8RK36 |
| VFG001260 | VFC0204 | Motility | Polar flagella | UniRef90_A0A071L0K5 |
| VFG001259 | VFC0204 | Motility | Polar flagella | UniRef90_Q51468 |
| VFG001258 | VFC0204 | Motility | Polar flagella | UniRef90_Q51467 |
| VFG001257 | VFC0204 | Motility | Polar flagella | UniRef90_A0A127MWW5 |
| VFG001256 | VFC0204 | Motility | Polar flagella | UniRef90_Q51465 |
| VFG014486 | VFC0204 | Motility | Polar flagella | UniRef90_A0A022NZV4 |
| VFG014473 | VFC0204 | Motility | Polar flagella | UniRef90_A6V857 |
| VFG001214 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_Q00934 |
| VFG001215 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A069PYC1 |
| VFG001216 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_Q59652 |
| VFG042140 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q51448 |
| VFG001235 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_O87005 |
| VFG001234 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_O87004 |
| VFG001233 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_O87003 |
| VFG001232 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A2R3IRN7 |
| VFG001227 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_P43502 |
| VFG001224 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_G3XCX3 |
| VFG014893 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q02E40 |
| VFG016005 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A231ZIS3 |
| VFG044085 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A069PX34 |
| VFG041043 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0F6RSD0 |
| VFG041042 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A080VGJ7 |
| VFG041041 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A8G2RHN4 |
| VFG041040 | VFC0086 | Effector delivery system | T2SS | UniRef90_A6V5B8 |
| VFG041039 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0A8RNH0 |
| VFG041038 | VFC0086 | Effector delivery system | T2SS | UniRef90_G8QBH8 |
| VFG041037 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A8B4ZT51 |
| VFG041036 | VFC0086 | Effector delivery system | T2SS | UniRef90_A6V5C2 |
| VFG041035 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A3E1N054 |
| VFG041034 | VFC0086 | Effector delivery system | T2SS | UniRef90_UPI000F789522 |
| VFG041033 | VFC0086 | Effector delivery system | T2SS | UniRef90_A6V5C6 |
| VFG041032 | VFC0086 | Effector delivery system | T2SS | UniRef90_A6V5C7 |
| VFG041031 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A3M5DC48 |
| VFG014694 | VFC0204 | Motility | Polar flagella | UniRef90_A0A024HQ78 |
| VFG000141 | VFC0258 | Immune modulation | LPS | UniRef90_A6VDA7 |
| VFG000140 | VFC0258 | Immune modulation | LPS | UniRef90_Q9HUF7 |
| VFG000139 | VFC0258 | Immune modulation | LPS | UniRef90_A0A069QA96 |
| VFG000142 | VFC0258 | Immune modulation | LPS | UniRef90_O33425 |
| VFG000143 | VFC0258 | Immune modulation | LPS | UniRef90_O05196 |
| VFG000121 | VFC0271 | Biofilm | Csu fimbriae | UniRef90_Q06198 |
| VFG000171 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_Q51508 |
| VFG016087 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_Q5DIN3 |
| VFG050300 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A072ZBU1 |
| VFG050299 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_Q9I2F2 |
| VFG050298 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_V6AG60 |
| VFG050297 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A6A9KFQ6 |
| VFG050296 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A3M5D456 |
| VFG050295 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_A0A072ZBU4 |
| VFG016046 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A2R3IST8 |
| VFG044088 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A0A8RNQ1 |
| VFG016041 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A643EJ37 |
| VFG000160 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_Q5DIW1 |
| VFG050294 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I733 |
| VFG015551 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A643IS24 |
| VFG013948 | VFC0001 | Adherence | Acinetobacter trimeric autotransporter_Ata | UniRef90_Q51538 |
| VFG002062 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A1Y3KGX5 |
| VFG002063 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I755 |
| VFG002064 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A3S4NQH5 |
| VFG002065 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I753 |
| VFG002066 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A080VF59 |
| VFG002076 | VFC0086 | Effector delivery system | T2SS | UniRef90_UPI0003B945B2 |
| VFG002075 | VFC0086 | Effector delivery system | T2SS | UniRef90_A0A0C7CXW4 |
| VFG002074 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I744 |
| VFG002073 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I745 |
| VFG044098 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A1C7B7G6 |
| VFG002069 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I749 |
| VFG002068 | VFC0086 | Effector delivery system | T2SS | UniRef90_Q9I750 |
| VFG044096 | VFC0272 | Nutritional/Metabolic factor | Acinetobactin | UniRef90_A0A0C6ER87 |
5. BacDive
|
BacDive
|
|
|---|---|
| Species | Pseudomonas aeruginosa |
| ncbi_taxid | 287 |
| taxid_matching_level | species |
| type_strain | no |
| medium_name | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) |
| medium_link | NA |
| strain_history | NA |
| gram | NA |
| length | NA |
| width | NA |
| motility | NA |
| oxygen_tolerance | NA |
| spore | NA |
| aggregation_score | NA |
| GC_content | NA |
| antibiotic_resistance_chebi | NA |
| antibiotic_resistance_metabolite | NA |
6. Publications
7. U.S. Patents
First 10 patents out of 84
| patent_number | patent_title |
|---|---|
| 10072305 | Real-time PCR for the detection of pathogens |
| 10077431 | Phage therapy of pseudomonas infections |
| 10105380 | Glycoclusters and their pharmaceutical use as antibacterials |
| 10117905 | Compositions and methods to prevent cancer with cupredoxins |
| 10159751 | ExPEC glycoconjugate vaccine formulations |
| 10179146 | Compositions and methods for mitigating drug resistant bacteria |
| 10221222 | Dermaseptin-type and piscidin-type antimicrobial peptides |
| 10238689 | Methods for combating bacterial infections by killing persister cells with mitomycin C and/or cisplatin |
| 10258640 | Method of inhibiting quorum sensing in Pseudomonas aeruginosa |
| 10260051 | Phage therapy of Pseudomonas infections |